PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0082s0110.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 179aa    MW: 19850.4 Da    PI: 8.1282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0082s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.4e-161762352
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                         y+GVr ++ +g+Wv+eIr p++   r r++lg+f  ae+Aa+a++ a ++
  Kaladp0082s0110.1.p 17 YRGVRMRS-WGKWVSEIRQPRK---RSRVWLGTFPNAEMAARAHDVASLA 62
                         9****998.**********954...5*******************99766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-111562IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-201674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-301674IPR001471AP2/ERF domain
SMARTSM003802.0E-331679IPR001471AP2/ERF domain
PROSITE profilePS5103222.3791673IPR001471AP2/ERF domain
CDDcd000183.14E-291775No hitNo description
PRINTSPR003673.1E-101728IPR001471AP2/ERF domain
PRINTSPR003673.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
AKEERRGGRS DGKPPAYRGV RMRSWGKWVS EIRQPRKRSR VWLGTFPNAE MAARAHDVAS  60
LAFKSKSAHL NFPHLVQHLP QHASLLPSHI RAAASKAAAM THLTSCPPTQ VKPAELSDDH  120
SPAEAVMSWS ADQEAQQGSY WNEMGSELVE LPSLAESEAL QRCLWDELRI MDSDGCWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-131777667ATERF1
2gcc_A1e-131777667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626957.15e-42PREDICTED: ethylene-responsive transcription factor ERF043-like
TrEMBLA0A078I7C65e-42A0A078I7C6_BRANA; BnaA08g12010D protein
TrEMBLA0A0D3BLR55e-42A0A0D3BLR5_BRAOL; Uncharacterized protein
STRINGBra034535.1-P3e-41(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-36ERF family protein